Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| STAD | rs42593 | chr7:30405691 | T/C | 3.8E-6 | 398 | 14.23 | 16.45 | 2.7 | KM Plot |
| STAD | rs42595 | chr7:30406471 | A/G | 3.8E-6 | 398 | 14.23 | 16.45 | 2.7 | KM Plot |
| STAD | rs430301 | chr17:28943570 | C/T | 1.57E-5 | 396 | 14.13 | 16.53 | 9.8 | KM Plot |
| STAD | rs4354510 | chr1:227451815 | T/G | 0 | 404 | 14.25 | 14.45 | 1.48 | KM Plot |
| STAD | rs436542 | chr8:17886026 | G/A | 3.9E-5 | 398 | 12.6 | 16.27 | 14.23 | KM Plot |
| STAD | rs450585 | chr17:28951039 | G/A | 1.87E-5 | 402 | 14.07 | 16.6 | 9.8 | KM Plot |
| STAD | rs452418 | chr17:28951301 | T/C | 1.8E-5 | 403 | 14.07 | 16.53 | 9.8 | KM Plot |
| STAD | rs4551563 | chr1:227278899 | G/A | 0 | 403 | 14.27 | 14.45 | 1.48 | KM Plot |
| STAD | rs4814749 | chr20:18418332 | C/T | 2.05E-5 | 406 | 14.67 | 14.37 | 8.87 | KM Plot |
| STAD | rs482964 | chr8:17905211 | A/G | 3.16E-5 | 402 | 11.77 | 15.7 | 14.63 | KM Plot |
| STAD | rs4915307 | chr1:197048608 | T/C | 5.24E-7 | 406 | 5.8 | 17.77 | 14.07 | KM Plot |
| STAD | rs4915309 | chr1:197048781 | A/T | 5.24E-7 | 406 | 5.8 | 17.77 | 14.07 | KM Plot |
| STAD | rs4915327 | chr1:197079130 | T/C | 1.62E-7 | 405 | 4.02 | 17.43 | 14.07 | KM Plot |
| STAD | rs4915337 | chr1:197091537 | A/T | 1.2E-7 | 406 | 4.02 | 17.05 | 14.07 | KM Plot |
| STAD | rs4915345 | chr1:197102839 | A/C | 9.32E-8 | 406 | 2.23 | 16.52 | 14.07 | KM Plot |